PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0077400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 189aa    MW: 21625.1 Da    PI: 11.2835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0077400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-122273155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +r++h + Er RR+ +N+ ++ Lr ++P+      ++ + a+i   +++Y+k+L+
  Spipo1G0077400 22 QRMTHIALERSRRKLMNEHLSSLRHIVPPH---FIRRGDQASIIGGTIKYVKQLE 73
                    79***************************9...9*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.94E-72070No hitNo description
Gene3DG3DSA:4.10.280.105.7E-132077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.0022172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-152191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-92273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-112778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGKRKRKRSQ PPTKNVKEVE NQRMTHIALE RSRRKLMNEH LSSLRHIVPP HFIRRGDQAS  60
IIGGTIKYVK QLEQLLQSLL VKRGERDRRH TYFSCTSPLT SIYRFREFFP SPQYTLHTSQ  120
SPTIMEANVA ATVVQSHVNL TVLSRQKPGQ LLRAISELEN LHLSVLHINV TSLDSSVLYS  180
LNLKVPPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829211.19e-55PREDICTED: transcription factor bHLH94
TrEMBLW1NLC01e-54W1NLC0_AMBTC; Uncharacterized protein
STRINGGLYMA14G35560.13e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-48bHLH family protein